Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs372550393 chr3:52992614 ATAAAT/A 2.18E-14 254 30.93 34.57 1.17 KM Plot
SARC rs373588852 chr20:34176844 GA/G 0 247 31.57 33.9 1.07 KM Plot
SARC rs3736438 chr17:45486651 T/G 8.85E-5 258 19.97 34 32.35 KM Plot
SARC rs3744538 chr17:48166980 C/T 2.41E-5 248 31.27 33.77 9.27 KM Plot
SARC rs3755805 chr3:52866299 G/A 6.62E-12 256 31.1 35.17 3.1 KM Plot
SARC rs375991723 chr7:2100989 TTAAAA/TTAAAATAAAA 4.14E-9 257 30.73 37.17 5.1 KM Plot
SARC rs377055675 chr2:70232192 CTTA/C 4.35E-8 255 32.78 32.6 10.72 KM Plot
SARC rs377291271 chr3:52974851 GAAGTTAATTTTACCTGT/G 2.18E-14 254 30.93 34.57 1.17 KM Plot
SARC rs3781650 chr11:70271927 G/A 3.09E-5 252 30.32 36.33 23.03 KM Plot
SARC rs3781651 chr11:70270644 A/G 5.53E-5 254 30.73 36.27 23.03 KM Plot
SARC rs3792106 chr2:234190740 A/G 7.14E-5 258 26.83 32.3 36.35 KM Plot
SARC rs3794066 chr11:71194209 A/G 2.68E-5 255 8.62 20.4 33.2 KM Plot
SARC rs3794067 chr11:71194355 G/A 2.68E-5 255 8.62 20.4 33.2 KM Plot
SARC rs3796352 chr3:52913279 C/T 0 258 31.1 34.57 2.13 KM Plot
SARC rs3802781 chr11:70280893 G/A 4.63E-5 248 30.73 36.27 20.87 KM Plot